Genomic Location: not available for this species
NR annotation: CAB3983814.1, E3 ubiquitin- ligase TRIM37-like isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983814.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O94972 | E3 ubiquitin-protein ligase TRIM37 OS=Homo sapiens OX=9606 GN=TRIM37 PE=1 SV=2 |
| Q6PCX9 | E3 ubiquitin-protein ligase TRIM37 OS=Mus musculus OX=10090 GN=Trim37 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003743 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00917 all species → | MATH | MATH domain | Domain | Interproscan |
| PF00643 all species → | zf-B_box | B-box zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000315 all species → | Domain | B-box-type zinc finger | Interproscan |
| IPR002083 all species → | Domain | MATH/TRAF domain | Interproscan |
| IPR037299 all species → | Domain | TRIM37, MATH domain | Interproscan |
| IPR053003 all species → | Family | TRIM/RBCC E3 ubiquitin-protein ligases | Interproscan |
| IPR003649 all species → | Domain | B-box, C-terminal | Interproscan |
| IPR008974 all species → | Homologous_superfamily | TRAF-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR36754 all species → | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0005164 all species → | Molecular Function | tumor necrosis factor receptor binding | Interproscan |
| GO:0005777 all species → | Cellular Component | peroxisome | Interproscan |
| GO:0016235 all species → | Cellular Component | aggresome | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| GO:0032088 all species → | Biological Process | negative regulation of NF-kappaB transcription factor activity | Interproscan |
| GO:0046600 all species → | Biological Process | negative regulation of centriole replication | Interproscan |
| GO:0051092 all species → | Biological Process | positive regulation of NF-kappaB transcription factor activity | Interproscan |
| GO:0051865 all species → | Biological Process | protein autoubiquitination | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
CAB3983814.1.Transcript abundance of CAB3983814.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
