Genomic Location: not available for this species
NR annotation: CAB3983819.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983819.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004007 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07145 all species → | PAM2 | Ataxin-2 C-terminal region | Motif | Interproscan |
| PF06741 all species → | LsmAD | LsmAD domain | Domain | Interproscan |
| PF14438 all species → | SM-ATX | Ataxin 2 SM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009818 all species → | Domain | Ataxin-2, C-terminal | Interproscan |
| IPR045117 all species → | Family | Ataxin2-like | Interproscan |
| IPR009604 all species → | Domain | LsmAD domain | Interproscan |
| IPR025852 all species → | Domain | Ataxin 2, SM domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12854 all species → | ATAXIN 2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0010494 all species → | Cellular Component | cytoplasmic stress granule | Interproscan |
| GO:0034063 all species → | Biological Process | stress granule assembly | Interproscan |
CAB3983819.1.Transcript abundance of CAB3983819.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
