Genomic Location: not available for this species
NR annotation: CAB3983880.1, glutamate receptor ionotropic, NMDA 1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3983880.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P35439 | Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1 |
| Q05586 | Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1 |
| P35438 | Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus OX=10090 GN=Grin1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000921 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00060 all species → | Lig_chan | Ligand-gated ion channel | Family | Interproscan |
| PF00497 all species → | SBP_bac_3 | Bacterial extracellular solute-binding proteins, family 3 | Domain | Interproscan |
| PF10613 all species → | Lig_chan-Glu_bd | Ligated ion channel L-glutamate- and glycine-binding site | Domain | Interproscan |
| PF01094 all species → | ANF_receptor | Receptor family ligand binding region | Family | Interproscan |
| PF10562 all species → | CaM_bdg_C0 | Calmodulin-binding domain C0 of NMDA receptor NR1 subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015683 all species → | Family | Ionotropic glutamate receptor | Interproscan |
| IPR001320 all species → | Domain | Ionotropic glutamate receptor, C-terminal | Interproscan |
| IPR019594 all species → | Domain | Ionotropic glutamate receptor, L-glutamate and glycine-binding domain | Interproscan |
| IPR001638 all species → | Domain | Solute-binding protein family 3/N-terminal domain of MltF | Interproscan |
| IPR001508 all species → | Family | Ionotropic glutamate receptor, metazoa | Interproscan |
| IPR001828 all species → | Domain | Receptor, ligand binding region | Interproscan |
| IPR028082 all species → | Homologous_superfamily | Periplasmic binding protein-like I | Interproscan |
| IPR018882 all species → | Domain | Calmodulin-binding domain C0, NMDA receptor, NR1 subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18966 all species → | IONOTROPIC GLUTAMATE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015276 all species → | Molecular Function | ligand-gated monoatomic ion channel activity | Interproscan |
| GO:0038023 all species → | Molecular Function | signaling receptor activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05208 | GRIN1; glutamate receptor ionotropic, NMDA 1 | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of CAB3983880.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
