Gene detail

Detailed information of CAB3984037.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3984037.1, ribonucleoside-diphosphate reductase large subunit, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3984037.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23921	Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens OX=9606 GN=RRM1 PE=1 SV=1
Q5R919	Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii OX=9601 GN=RRM1 PE=2 SV=1
P07742	Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus OX=10090 GN=Rrm1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02867 all species →	Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	Family	Interproscan
PF03477 all species →	ATP-cone	ATP cone domain	Domain	Interproscan
PF00317 all species →	Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000788 all species →	Domain	Ribonucleotide reductase large subunit, C-terminal	Interproscan
IPR013346 all species →	Domain	Ribonucleotide reductase, class I, alpha subunit, C-terminal	Interproscan
IPR005144 all species →	Domain	ATP-cone domain	Interproscan
IPR039718 all species →	Family	Ribonucleoside-diphosphate reductase large subunit	Interproscan
IPR008926 all species →	Homologous_superfamily	Ribonucleotide reductase R1 subunit, N-terminal	Interproscan
IPR013509 all species →	Domain	Ribonucleotide reductase large subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11573 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005971 all species →	Cellular Component	ribonucleoside-diphosphate reductase complex	Interproscan
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3984037.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3984037.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

13TPM > 0

4Conditions

132.5Max TPM

25.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	50.45	132.55
apical branchlet · Temperature treatment at T0	6	5	37.71	102.71
apical branchlet · Temperature treatment at T25	5	1	0.12	0.61
apical branchlet · Control at T0	4	1	1.66	6.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	132.55
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	63.05
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	57.81
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	29.33
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	10.25
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	9.74
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	102.71
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	65.39
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	32.55
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	16.73
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	8.86
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.61
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	6.63
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.