Genomic Location: not available for this species
NR annotation: CAB3984038.1, ribonucleoside-diphosphate reductase large subunit [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3984038.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P23921 | Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens OX=9606 GN=RRM1 PE=1 SV=1 |
| Q5R919 | Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii OX=9601 GN=RRM1 PE=2 SV=1 |
| P07742 | Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus OX=10090 GN=Rrm1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003633 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03477 all species → | ATP-cone | ATP cone domain | Domain | Interproscan |
| PF00317 all species → | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain | Domain | Interproscan |
| PF02867 all species → | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005144 all species → | Domain | ATP-cone domain | Interproscan |
| IPR013509 all species → | Domain | Ribonucleotide reductase large subunit, N-terminal | Interproscan |
| IPR008926 all species → | Homologous_superfamily | Ribonucleotide reductase R1 subunit, N-terminal | Interproscan |
| IPR000788 all species → | Domain | Ribonucleotide reductase large subunit, C-terminal | Interproscan |
| IPR039718 all species → | Family | Ribonucleoside-diphosphate reductase large subunit | Interproscan |
| IPR013346 all species → | Domain | Ribonucleotide reductase, class I, alpha subunit, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11573 all species → | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004748 all species → | Molecular Function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0009263 all species → | Biological Process | deoxyribonucleotide biosynthetic process | Interproscan |
| GO:0005971 all species → | Cellular Component | ribonucleoside-diphosphate reductase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10807 | RRM1; ribonucleoside-diphosphate reductase subunit M1 | EC:1.17.4.1 | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB3984038.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
