Genomic Location: not available for this species
NR annotation: CAB3984148.1, Vacuolar -sorting-associated 25 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3984148.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6NWF4 | Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2 |
| Q6AX45 | Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1 |
| Q9BRG1 | Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens OX=9606 GN=VPS25 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008224 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05871 all species → | ESCRT-II | ESCRT-II complex subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR014041 all species → | Homologous_superfamily | ESCRT-II complex, Vps25 subunit, N-terminal winged helix | Interproscan |
| IPR008570 all species → | Family | ESCRT-II complex, Vps25 subunit | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13149 all species → | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000814 all species → | Cellular Component | ESCRT II complex | Interproscan |
| GO:0071985 all species → | Biological Process | multivesicular body sorting pathway | Interproscan |
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0042803 all species → | Molecular Function | protein homodimerization activity | Interproscan |
| GO:0043328 all species → | Biological Process | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12189 | VPS25, EAP20; ESCRT-II complex subunit VPS25 | - | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB3984148.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 23.48 | 82.02 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 15.73 | 58.74 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.09 | 5.46 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.94 | 7.76 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
