Genomic Location: not available for this species
NR annotation: CAB3984171.1, 60S ribosomal L12 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3984171.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P23358 | Large ribosomal subunit protein uL11 OS=Rattus norvegicus OX=10116 GN=Rpl12 PE=2 SV=1 |
| P61284 | Large ribosomal subunit protein uL11 OS=Bos taurus OX=9913 GN=RPL12 PE=2 SV=1 |
| E2RR58 | Large ribosomal subunit protein uL11 OS=Canis lupus familiaris OX=9615 GN=RPL12 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008406 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03946 all species → | Ribosomal_L11_N | Ribosomal protein L11, N-terminal domain | Domain | Interproscan |
| PF00298 all species → | Ribosomal_L11 | Ribosomal protein L11, RNA binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020784 all species → | Domain | Large ribosomal subunit protein uL11, N-terminal | Interproscan |
| IPR020785 all species → | Conserved_site | Large ribosomal subunit protein uL11, conserved site | Interproscan |
| IPR036769 all species → | Homologous_superfamily | Large ribosomal subunit protein uL11, C-terminal domain superfamily | Interproscan |
| IPR000911 all species → | Family | Ribosomal protein uL11 | Interproscan |
| IPR036796 all species → | Homologous_superfamily | Large ribosomal subunit protein uL11, N-terminal domain superfamily | Interproscan |
| IPR020783 all species → | Domain | Large ribosomal subunit protein uL11, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11661 all species → | 60S RIBOSOMAL PROTEIN L12 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0015934 all species → | Cellular Component | large ribosomal subunit | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0070180 all species → | Molecular Function | large ribosomal subunit rRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02870 | RP-L12e, RPL12; large subunit ribosomal protein L12e | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of CAB3984171.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
