Gene detail

Detailed information of CAB3984398.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3984398.1, mitochondrial import receptor subunit TOM20 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3984398.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVY0	Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus laevis OX=8355 GN=tomm20 PE=2 SV=1
Q6DFM9	Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus tropicalis OX=8364 GN=tomm20 PE=2 SV=1
A6H7B1	Mitochondrial import receptor subunit TOM20 homolog OS=Bos taurus OX=9913 GN=TOMM20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02064 all species →	MAS20	MAS20 protein import receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002056 all species →	Family	Protein import receptor MAS20	Interproscan
IPR022422 all species →	Family	Protein import receptor MAS20, metazoan	Interproscan
IPR023392 all species →	Homologous_superfamily	Mitochondrial outer membrane translocase complex, Tom20 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12430 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005742 all species →	Cellular Component	mitochondrial outer membrane translocase complex	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0016031 all species →	Biological Process	tRNA import into mitochondrion	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0030943 all species →	Molecular Function	mitochondrion targeting sequence binding	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3984398.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3984398.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

19TPM > 0

4Conditions

312.5Max TPM

109.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	112.11	208.68
apical branchlet · Temperature treatment at T0	6	5	105.22	170.40
apical branchlet · Temperature treatment at T25	5	5	69.57	100.26
apical branchlet · Control at T0	4	4	161.16	312.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	208.68
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	131.35
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	129.71
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	105.77
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	97.16
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	170.40
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	144.41
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	135.03
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	105.98
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	75.47
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	100.26
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	99.12
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	80.65
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	44.04
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	23.76
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	312.49
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	142.46
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	96.57
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	93.14

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.