Genomic Location: not available for this species
NR annotation: CAB3984482.1, DNA mismatch repair Mlh1 isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3984482.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P40692 | DNA mismatch repair protein Mlh1 OS=Homo sapiens OX=9606 GN=MLH1 PE=1 SV=1 |
| Q9JK91 | DNA mismatch repair protein Mlh1 OS=Mus musculus OX=10090 GN=Mlh1 PE=1 SV=2 |
| P97679 | DNA mismatch repair protein Mlh1 OS=Rattus norvegicus OX=10116 GN=Mlh1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005246 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16413 all species → | Mlh1_C | DNA mismatch repair protein Mlh1 C-terminus | Domain | Interproscan |
| PF13589 all species → | HATPase_c_3 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| PF01119 all species → | DNA_mis_repair | DNA mismatch repair protein, C-terminal domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032189 all species → | Domain | DNA mismatch repair protein Mlh1, C-terminal | Interproscan |
| IPR014762 all species → | Conserved_site | DNA mismatch repair, conserved site | Interproscan |
| IPR014721 all species → | Homologous_superfamily | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Interproscan |
| IPR013507 all species → | Domain | DNA mismatch repair protein, S5 domain 2-like | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR038973 all species → | Family | DNA mismatch repair protein MutL/Mlh/Pms-like | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR002099 all species → | Family | DNA mismatch repair protein MutL/Mlh/PMS | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10073 all species → | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0030983 all species → | Molecular Function | mismatched DNA binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0032300 all species → | Cellular Component | mismatch repair complex | Interproscan |
| GO:0032389 all species → | Cellular Component | MutLalpha complex | Interproscan |
| GO:0140664 all species → | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08734 | MLH1; DNA mismatch repair protein MLH1 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB3984482.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
