Genomic Location: not available for this species
NR annotation: CAB3984496.1, serine threonine phosphatase 2C [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3984496.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B4R089 | Protein phosphatase PTC7 homolog fig OS=Drosophila simulans OX=7240 GN=fig PE=3 SV=1 |
| B4HZE7 | Protein phosphatase PTC7 homolog fig OS=Drosophila sechellia OX=7238 GN=fig PE=3 SV=1 |
| Q9VAH4 | Protein phosphatase PTC7 homolog fig OS=Drosophila melanogaster OX=7227 GN=fig PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007553 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07228 all species → | SpoIIE | Stage II sporulation protein E (SpoIIE) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001932 all species → | Domain | PPM-type phosphatase-like domain | Interproscan |
| IPR036457 all species → | Homologous_superfamily | PPM-type phosphatase-like domain superfamily | Interproscan |
| IPR039123 all species → | Family | Protein phosphatase PTC7 homolog | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12320 all species → | PROTEIN PHOSPHATASE 2C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004722 all species → | Molecular Function | protein serine/threonine phosphatase activity | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17508 | PTC7, PPTC7; protein phosphatase PTC7 | EC:3.1.3.16 | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of CAB3984496.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
