Detailed information of CAB3984965.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3984965.1, zinc finger FYVE domain-containing 26 isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB3984965.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E1BLZ4Zinc finger FYVE domain-containing protein 26 OS=Bos taurus OX=9913 GN=ZFYVE26 PE=3 SV=1
Q68DK2Zinc finger FYVE domain-containing protein 26 OS=Homo sapiens OX=9606 GN=ZFYVE26 PE=1 SV=4
Q5DU37Zinc finger FYVE domain-containing protein 26 OS=Mus musculus OX=10090 GN=Zfyve26 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003079 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01363
all species →
FYVEFYVE zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017455
all species →
DomainZinc finger, FYVE-relatedInterproscan
IPR000306
all species →
DomainFYVE zinc fingerInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR028730
all species →
FamilyZinc finger FYVE domain-containing protein 26Interproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46591
all species →
ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0000281
all species →
Biological Processmitotic cytokinesisInterproscan
GO:0000724
all species →
Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0005765
all species →
Cellular Componentlysosomal membraneInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0030496
all species →
Cellular ComponentmidbodyInterproscan
GO:0032266
all species →
Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0032465
all species →
Biological Processregulation of cytokinesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB3984965.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3984965.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
11TPM > 0
4Conditions
13.6Max TPM
2.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 4 2.80 7.19
apical branchlet · Temperature treatment at T0 6 4 3.00 13.58
apical branchlet · Temperature treatment at T25 5 1 0.88 4.42
apical branchlet · Control at T0 4 2 1.29 3.96

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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