Genomic Location: not available for this species
NR annotation: CAB3985006.1, proto-oncogene vav-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3985006.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q60992 | Guanine nucleotide exchange factor VAV2 OS=Mus musculus OX=10090 GN=Vav2 PE=1 SV=1 |
| P52735 | Guanine nucleotide exchange factor VAV2 OS=Homo sapiens OX=9606 GN=VAV2 PE=1 SV=2 |
| Q9R0C8 | Guanine nucleotide exchange factor VAV3 OS=Mus musculus OX=10090 GN=Vav3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002177 (this species only) |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00017 all species → | SH2 | SH2 domain | Domain | Interproscan |
| PF00130 all species → | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) | Domain | Interproscan |
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| PF01344 all species → | Kelch_1 | Kelch motif | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015915 all species → | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| IPR000980 all species → | Domain | SH2 domain | Interproscan |
| IPR002219 all species → | Domain | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR046349 all species → | Homologous_superfamily | C1-like domain superfamily | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| IPR006652 all species → | Repeat | Kelch repeat type 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45818 all species → | PROTEIN VAV | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0043087 all species → | Biological Process | regulation of GTPase activity | Interproscan |
CAB3985006.1.Transcript abundance of CAB3985006.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 11.02 | 19.79 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 4.60 | 16.12 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 2.79 | 5.13 | |
| apical branchlet · Control at T0 | 4 | 2 | 5.36 | 10.99 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
