Genomic Location: not available for this species
NR annotation: CAB3985019.1, PHD finger 3-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3985020.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q92576 | PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3 |
| Q8C9B9 | Death-inducer obliterator 1 OS=Mus musculus OX=10090 GN=Dido1 PE=1 SV=4 |
| Q9BTC0 | Death-inducer obliterator 1 OS=Homo sapiens OX=9606 GN=DIDO1 PE=1 SV=5 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003690 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07500 all species → | TFIIS_M | Transcription factor S-II (TFIIS), central domain | Domain | Interproscan |
| PF07533 all species → | BRK | BRK domain | Domain | Interproscan |
| PF07744 all species → | SPOC | SPOC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036575 all species → | Homologous_superfamily | Transcription elongation factor S-II, central domain superfamily | Interproscan |
| IPR003618 all species → | Domain | Transcription elongation factor S-II, central domain | Interproscan |
| IPR037259 all species → | Homologous_superfamily | BRK domain superfamily | Interproscan |
| IPR006576 all species → | Domain | BRK domain | Interproscan |
| IPR012921 all species → | Domain | Spen paralogue and orthologue SPOC, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11477 all species → | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB3985020.1.Transcript abundance of CAB3985020.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
