Genomic Location: not available for this species
NR annotation: CAB3985067.1, serine arginine repetitive matrix 1-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3985067.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8IYB3 | Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2 |
| Q5R5Q2 | Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=2 SV=1 |
| Q52KI8 | Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001370 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13472 all species → | Lipase_GDSL_2 | GDSL-like Lipase/Acylhydrolase family | Domain | Interproscan |
| PF01480 all species → | PWI | PWI domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002483 all species → | Domain | PWI domain | Interproscan |
| IPR036514 all species → | Homologous_superfamily | SGNH hydrolase superfamily | Interproscan |
| IPR013830 all species → | Domain | SGNH hydrolase-type esterase domain | Interproscan |
| IPR052225 all species → | Family | Serine/arginine repetitive matrix | Interproscan |
| IPR036483 all species → | Homologous_superfamily | PWI domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23148 all species → | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| GO:0048024 all species → | Biological Process | regulation of mRNA splicing, via spliceosome | Interproscan |
CAB3985067.1.Transcript abundance of CAB3985067.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
