Detailed information of CAB3985140.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3985140.1, adipolin-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB3985140.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8R2Z0Adipolin OS=Mus musculus OX=10090 GN=C1qtnf12 PE=1 SV=2
Q5T7M4Adipolin OS=Homo sapiens OX=9606 GN=C1QTNF12 PE=1 SV=2
A4IH36Adipolin OS=Xenopus tropicalis OX=8364 GN=c1qtnf12 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003598 (this species only)

 Pfam domain
No Pfam domain signature was detected for CAB3985140.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR008983
all species →
Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR052136
all species →
FamilyAdipolin/Erythroferrone-relatedInterproscan
IPR001073
all species →
DomainC1q domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24019
all species →
ADIPOLINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005179
all species →
Molecular Functionhormone activityInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21410C1QTNF12, FAM132A; adipolin-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3985140.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 0 0.00 0.00
apical branchlet · Temperature treatment at T0 6 0 0.00 0.00
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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