Gene detail

Detailed information of CAB3985627.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3985627.1, Vacuolar sorting-associated 13C, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3985627.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BX70	Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Q709C8	Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
Q96RL7	Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06650 all species →	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF09333 all species →	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan
PF21679 all species →	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan
PF16909 all species →	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009543 all species →	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR015412 all species →	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR049424 all species →	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan
IPR031645 all species →	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19525	VPS13A_C; vacuolar protein sorting-associated protein 13A/C	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3985627.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

17TPM > 0

4Conditions

35.8Max TPM

14.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	24.50	35.80
apical branchlet · Temperature treatment at T0	6	6	16.26	29.88
apical branchlet · Temperature treatment at T25	5	2	2.38	10.27
apical branchlet · Control at T0	4	3	12.43	30.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	35.80
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	34.28
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	27.58
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	23.35
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	20.10
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.89
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	29.88
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.18
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	17.38
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	16.50
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	8.34
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.29
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	10.27
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1.64
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	30.78
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	15.44
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	3.48
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.