Detailed information of CAB3985681.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3985681.1, ADP,ATP carrier 3, mitochondrial-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB3985681.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O49447ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AAC3 PE=1 SV=1
P25083ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum OX=4113 GN=ANT PE=2 SV=1
P31691ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0718900 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002810 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00153
all species →
Mito_carrMitochondrial carrier proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023395
all species →
Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR018108
all species →
RepeatMitochondrial substrate/solute carrierInterproscan
IPR002067
all species →
FamilyMitochondrial carrier proteinInterproscan
IPR002113
all species →
FamilyADP/ATP carrier protein, eukaryotic typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45635
all species →
ADP,ATP CARRIER PROTEIN 1-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005471
all species →
Molecular FunctionATP:ADP antiporter activityInterproscan
GO:0005743
all species →
Cellular Componentmitochondrial inner membraneInterproscan
GO:0140021
all species →
Biological Processmitochondrial ADP transmembrane transportInterproscan
GO:1901029
all species →
Biological Processnegative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathwayInterproscan
GO:1990544
all species →
Biological Processmitochondrial ATP transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05863SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3985681.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
9TPM > 0
4Conditions
451.4Max TPM
126.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 4 128.97 298.35
apical branchlet · Temperature treatment at T0 6 3 178.71 447.92
apical branchlet · Temperature treatment at T25 5 1 90.27 451.37
apical branchlet · Control at T0 4 1 87.72 350.87

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP