Gene detail

Detailed information of CAB3985683.1 in Paramuricea clavata

Genomic Location: pcla8_s000929:40186...43385
NR annotation: CAB3985683.1, ADP,ATP carrier 3, mitochondrial-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A058513-3

ATGGCCACGAGAGgtataggtaggtaggtaggtaggtaaaattGCATTTATGAATGTTGGTAATGTATCTGAAAATTCTGAATCACGCATCTCTGCAGGTGATGAGTTCCACAATTTAGCTTCATCACAACAGAAGCTTTTCTTAAGGTTTTCAGTTTTTGGCAAAGGTAGTTGCAGCGAGGTAGAGGAGCCCCTAAGATCATATTCTGTTATGTTTCTTTTGTGTACAAAGAGAGTAGCGAGTGAACTTGTGGCCAAATCATTTAGAACTTTGTACATTTGTTTAACTTTAGATTTGGCTTGTCGAGTTTCAAGAGGCTCCCACCCTAGAGCGTTTATTGCTTCTATACCAGGTGTATTGTACCTCAAATTCATTATTATTCTTGCAGCTCTATTCTACCAAGTGTATCCCTCAGGTATTCCTCGACGAACTTCAGCAATGCTAAGTTATTATTGGCTATTGCAGTGAAATGCTAAATTCTTATTGGTTAATTTACCAGCTTTGCGATTGAAAAAAAAgacatcctagcccgcgcacaggcattgctctgggtacgagattgcgcCCGCAATATTACGGCAATCATCCGGGAATTTATTAAGGCGTCATCATaaattgtgacgtcaaaattgGCTTCCGCAAGTTCGATCTTTTCTCAAGATCTTCCACCTGAGACGAGTTCAGCACACGTGCAATGTAAGTTTTATGCCAtttcttttactttttattCGAGTTTTAACGATATAATGTACGAATATACCTTACGTGATACTGTTCTTTCGTTTTGTGCCGAAATTGTTGCGAAAACGCGTCGAAAAGTGCGAGCAAAACGCTTGCAAAAATCGCCGGTTTTGGCCATGTAGGGCAAGTATAATATGCATTGTGAAATCTTTTTTCTGTTGCTTGCTTGTTGCAAATCTGATGGATTTTTTAAGGCAATGAACACATTGTCTTGGGACTtattttatcatttaaataactTCCAAACTTTTATGATAGCAAACCGAGATACTTGTAGTGCAATGAGAATTCTTGTTTTTATAGCGTCGCGTCCTATAAAGTTATAAACTAATATAAATTTTCGTTTGCCATTTGGCTTATAGATTTagaaaaaaagttgaaaaagttTTGGATAAGGGACgaattattaaaatatagaagaatttttcaattgaaatcCGTTGAGATTTCGTGTGCTTGCGTTTGCATACATGATCGACTTTGATCGTATATTTGATTCGAATTTCAATTtggctgaaataattttcagCATTGTACTTTGTACTGCCGTGCCAAAATTGGGCTGTACTCCTTAAGTATATTAGACAGATTGTTGTACACTGTACTGTATTGAATACCCGGTTTTCTGTGTGATTTTTAATGCAGGTTTTcagtttataaaaaaatatttcaaattctaggAAATGAGTtcatttcaacatttttaggAAATTGTGCATTTTATTGTACCCAAGTAATCACTGAATCATTGGAATTCCCCACACTTGAGTAGTGGTAGGCAGGATGGTTAGCTCAGAATATCCCCAGGGGTGGAGCCCCACTGCACTGTACTTTATCACAATGCCGCAGATACAAATCTCTATTTACACCtaaaatttcattttgtttgtaacaaGCATTTGAGGGTTTCAATTAGCTCAGCCAATCAGGGCGAGGCTAGAGGATTTACATGATTGGATTTAAACCTGTCAAAATGCTCTTTTCACAAGAATTTAAAGTTACGTGAACATAGGTGATTTTGTTGTAACTGTCCGGTACTTACATGCAAACAACTGTATAATAGATTGTCAACCCTTGATTATCAGGTAAATTTTCAAGTAAAAGGAACTGTTGTCTAATGTATATACACATTTTTCTTTCAGAGAAATCTAAACAAATATGGCAGAGAAAACCAAGAAACTTGGTTTTGCTGAAAACTTTGCCCTCAGCGGTGTCGCAGCTGTAATCTCAAAAACTGCCGCTGCTCCTATTGAACGTATCAAGCTTCTGGTTCAAAACCAAGATGAAATGCTCAAGACTGGTCGTCTGGCCGAGCCATACAAGGGTGTCATCGATTGCACAATGAAGACCTACCGTTCAGAAGGTTTCTTGCCTTTCTGGAGGGGTAACTTGGCTAACTGCATCCGTTACTTCCCCACGCAAGCTCTTAACTTTGCTTTTAAAGACAAAGTGAAAGCTGTTTTCAAGATCAGTAAGACAGACGGGTCTGCCATGAAATTCACGAAGAATATTGTTGCTGGTGGTTGTGCTGGTGCAATGTCCCTTGTTTTTGTGTACTCCTTGGATTACGCTCGAACCAGGTTGGCCAATGACACTAAGGCTGCTGGGAAGGGTGCTGAACGTCAATTCAATGGTCTTGTTGACGTCTACAGAAAGACCTTGAAAAGTGATGGTATTCAAGGGCTCTATCGAGGCTTTGCCATTTCCTGTGTGGGTATCATTGTCTACCGAGGTTTCTACTTTGGTCTCTATGACACACTCAAGCCAATTATGTTGGGCGAAGATGCAGGTTTGTATTTTGCATTTCAATTAAGTTgttcagatgattttacttgaaACAAGCCCATTTTCATGTGTAATTGAGATGGTTTGATAAACATTCTTGTATGTGCATAATAACAAGTCTTCTTGCCCTCCTTCTCAGGTTGAAAAATTCCATTCCATTTTCAGTCAGATGGCAAGAAGGCATATAAAGATACACAGACATAAAAGAATATTTACATCCGTCTCTATTAATATAAAATTGGTTTACGAGACCCACTTCACATGAACTATGCGACCTACTTGGTCTATGGGCCCCTTTTGTCTCTTGTTAACCCGCCATTCTACAATTTCCCACATATTCAAACTACTTTGTTTTACCTTGTCttatgccagatgattttgttttgctttaGGTCTTGTTCTGTCATTTTGCCTTGGCTATGCCGTGACTGTCAGCGCCGGTCTGGCATCTTACCCAATTGATACTATCCGAAGACGTATGATGATGACATCGGGAGAGGCTGTCAAATATAAGGGCTCGATAGATTGCTTTTTGCAAGTTGTGCGTAACGAGGGTGCTCTGTCACTGATGAAGGGTGCTGGTGCTAATATCTTGAGAGGTGTTGCAGGCGCTGGTGTGCTCGCAGGTTTCGATAAATTCAAGGCTCTCTACATCGCATGGCGTCTCACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O22342	ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum OX=3635 GN=ANT1 PE=2 SV=1
P04709	ADP,ATP carrier protein 1, mitochondrial OS=Zea mays OX=4577 GN=ANT1 PE=2 SV=3
Q41629	ADP,ATP carrier protein 1, mitochondrial OS=Triticum aestivum OX=4565 GN=ANT-G1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002810 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002113 all species →	Family	ADP/ATP carrier protein, eukaryotic type	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45635 all species →	ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005471 all species →	Molecular Function	ATP:ADP antiporter activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0140021 all species →	Biological Process	mitochondrial ADP transmembrane transport	Interproscan
GO:1990544 all species →	Biological Process	mitochondrial ATP transmembrane transport	Interproscan
GO:1901029 all species →	Biological Process	negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05863	SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3985683.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

13TPM > 0

4Conditions

220.8Max TPM

59.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	2	26.88	100.52
apical branchlet · Temperature treatment at T0	6	4	30.01	88.82
apical branchlet · Temperature treatment at T25	5	4	137.97	220.82
apical branchlet · Control at T0	4	3	53.40	148.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	100.52
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	60.77
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	88.82
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	84.67
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	5.19
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.39
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	220.82
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	183.40
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	155.98
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	129.64
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	148.65
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	54.01
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	10.94
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.