Genomic Location: not available for this species
NR annotation: CAB3985904.1, thrombospondin-3 isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3985904.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P49746 | Thrombospondin-3 OS=Homo sapiens OX=9606 GN=THBS3 PE=1 SV=1 |
| Q05895 | Thrombospondin-3 OS=Mus musculus OX=10090 GN=Thbs3 PE=1 SV=2 |
| Q9Z1T2 | Thrombospondin-4 OS=Mus musculus OX=10090 GN=Thbs4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000875 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF05735 all species → | TSP_C | Thrombospondin C-terminal region | Family | Interproscan |
| PF11598 all species → | COMP | Cartilage oligomeric matrix protein | Family | Interproscan |
| PF02412 all species → | TSP_3 | Thrombospondin type 3 repeat | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR028974 all species → | Homologous_superfamily | TSP type-3 repeat | Interproscan |
| IPR008859 all species → | Domain | Thrombospondin, C-terminal | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| IPR024665 all species → | Domain | Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR003367 all species → | Repeat | Thrombospondin, type 3-like repeat | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10199 all species → | THROMBOSPONDIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0007155 all species → | Biological Process | cell adhesion | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
CAB3985904.1.Transcript abundance of CAB3985904.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 15.08 | 23.72 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 36.69 | 108.16 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 3.97 | 14.39 | |
| apical branchlet · Control at T0 | 4 | 4 | 29.48 | 53.26 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
