Genomic Location: not available for this species
NR annotation: CAB3985980.1, lysine-specific demethylase 5A-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3985980.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P29375 | Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3 |
| Q3UXZ9 | Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2 |
| Q9UGL1 | Lysine-specific demethylase 5B OS=Homo sapiens OX=9606 GN=KDM5B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004250 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02375 all species → | JmjN | jmjN domain | Family | Interproscan |
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| PF08429 all species → | PLU-1 | PLU-1-like protein | Family | Interproscan |
| PF21323 all species → | KDM5_C-hel | Lysine-specific demethylase 5, C-terminal helical domain | Domain | Interproscan |
| PF01388 all species → | ARID | ARID/BRIGHT DNA binding domain | Domain | Interproscan |
| PF02928 all species → | zf-C5HC2 | C5HC2 zinc finger | Domain | Interproscan |
| PF02373 all species → | JmjC | JmjC domain, hydroxylase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003349 all species → | Domain | JmjN domain | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR013637 all species → | Domain | Lysine-specific demethylase-like domain | Interproscan |
| IPR048615 all species → | Domain | Lysine-specific demethylase 5, C-terminal helical domain | Interproscan |
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR036431 all species → | Homologous_superfamily | ARID DNA-binding domain superfamily | Interproscan |
| IPR001606 all species → | Domain | ARID DNA-binding domain | Interproscan |
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR004198 all species → | Domain | Zinc finger, C5HC2-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10694 all species → | LYSINE-SPECIFIC DEMETHYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0000785 all species → | Cellular Component | chromatin | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
| GO:0032452 all species → | Molecular Function | histone demethylase activity | Interproscan |
| GO:0034647 all species → | Molecular Function | histone H3K4me/H3K4me2/H3K4me3 demethylase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11446 | KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase | EC:1.14.11.67 | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3985980.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
