Genomic Location: not available for this species
NR annotation: CAB3986151.1, SWI SNF complex subunit SMARCC2-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3986151.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8TAQ2 | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1 |
| Q6PDG5 | SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2 |
| P97496 | SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004403 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16495 all species → | SWIRM-assoc_1 | SWIRM-associated region 1 | Family | Interproscan |
| PF04433 all species → | SWIRM | SWIRM domain | Domain | Interproscan |
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR032451 all species → | Domain | SMARCC, C-terminal | Interproscan |
| IPR007526 all species → | Domain | SWIRM domain | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| IPR049898 all species → | Domain | MarR-like, BRCT and chromo domains module | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12802 all species → | SWI/SNF COMPLEX-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0016514 all species → | Cellular Component | SWI/SNF complex | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:0045893 all species → | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11649 | SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3986151.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 1.24 | 5.07 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 3.54 | 6.94 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 5.51 | 10.53 | |
| apical branchlet · Control at T0 | 4 | 4 | 3.37 | 7.75 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
