Genomic Location: not available for this species
NR annotation: CAB3986474.1, general vesicular transport factor p115-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3986474.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P41541 | General vesicular transport factor p115 OS=Bos taurus OX=9913 GN=USO1 PE=1 SV=1 |
| O60763 | General vesicular transport factor p115 OS=Homo sapiens OX=9606 GN=USO1 PE=1 SV=2 |
| Q9Z1Z0 | General vesicular transport factor p115 OS=Mus musculus OX=10090 GN=Uso1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004575 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04869 all species → | Uso1_p115_head | Uso1 / p115 like vesicle tethering protein, head region | Repeat | Interproscan |
| PF18770 all species → | Arm_vescicular | Armadillo tether-repeat of vescicular transport factor | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR006953 all species → | Domain | Vesicle tethering protein Uso1/P115-like, head domain | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR041209 all species → | Repeat | Vesicle tethering protein p115, armadillo tether-repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10013 all species → | GENERAL VESICULAR TRANSPORT FACTOR P115 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0048280 all species → | Biological Process | vesicle fusion with Golgi apparatus | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005795 all species → | Cellular Component | Golgi stack | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0012507 all species → | Cellular Component | ER to Golgi transport vesicle membrane | Interproscan |
| GO:0045056 all species → | Biological Process | transcytosis | Interproscan |
| GO:0048211 all species → | Biological Process | Golgi vesicle docking | Interproscan |
| GO:0061025 all species → | Biological Process | membrane fusion | Interproscan |
CAB3986474.1.Transcript abundance of CAB3986474.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
