Genomic Location: not available for this species
NR annotation: CAB3987010.1, WASH complex subunit 4-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3987010.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2M389 | WASH complex subunit 4 OS=Homo sapiens OX=9606 GN=WASHC4 PE=1 SV=2 |
| Q3UMB9 | WASH complex subunit 4 OS=Mus musculus OX=10090 GN=Washc4 PE=1 SV=2 |
| Q54R74 | WASH complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=washc4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003103 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14744 all species → | WASH-7_mid | WASH complex subunit 7 | Family | Interproscan |
| PF14745 all species → | WASH-4_N | WASH complex subunit 4, N-terminal | Domain | Interproscan |
| PF14746 all species → | WASH-7_C | WASH complex subunit 7, C-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027307 all species → | Family | WASH complex subunit 7 | Interproscan |
| IPR028282 all species → | Domain | WASH complex subunit 7, central domain | Interproscan |
| IPR028191 all species → | Domain | WASH complex subunit 4, N-terminal | Interproscan |
| IPR028283 all species → | Domain | WASH complex subunit 7, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31409 all species → | WASH COMPLEX SUBUNIT 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005768 all species → | Cellular Component | endosome | Interproscan |
| GO:0007032 all species → | Biological Process | endosome organization | Interproscan |
| GO:0016197 all species → | Biological Process | endosomal transport | Interproscan |
| GO:0071203 all species → | Cellular Component | WASH complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18465 | MRT43, SWIP; WASH complex subunit 7 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3987010.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
