Gene detail

Detailed information of CAB3987156.1 in Paramuricea clavata

Genomic Location: pcla8_s001155:55737...57830
NR annotation: CAB3987156.1, zinc finger 271-like [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A034781

TTTCATCACCTAATTTCTTCTGCATCAAATCAAATTTATATACAGGGCTTCAAAACAGCGAGTTCAAGttgtaattaattaaactttaattCATTTGAAATACGTTAGAATTTCCTGAAGGCAGCAGACGGTAGGTGAATATTTTCTACcttattttatatactttttaattaatttaagtgCTGAGACCATTTGTATTAATTTGAGCTtttctgttaaatattaaatagatggATGTAAAAAGTAATGGAGTCCCTGATGGAAAGATTGGAATAAAGTCACATAAGTGCGAAATTTGTTCCAAGGTATACCCTAAATTATCGCACTTGCTTCGCCATAAAAGGTCACATACTGGAGACAGACCTTTCAGATGTCATATTTGTCATGTGTCCTTTAGACGTAATGAACAAGTGGTACTTCATGTAAAAAGAAAACATAAGGGACAGAACCCCTACAGGTGTATCACATGCCATCAAACATTTGCACAATCAAGCGATTTAGTGTCTCACAAAAAGACACATAGCAGTGAAAGAGTTCACCAGTGCAATATTTGCAAGCAGTTATTTCGTACCAAGGTGACTTAGTGATTCACACCAGAAACACACAGGTGAACGCCCTTTTCAATGTGGCATCTGTGGTATGGCATTTGCAAGACCACGTTGTTTGGTTCGGCATAAAACAATCCATGCTGAAGATAAAGCATATCAATGTGATATATGTCCCAAGTCATTTGCACGTAGCGACAATCTGGCAGCACATAAACGAACACATTCCACAGAAAGACCTTTCACCTGTGACATTTGCAGTAAATCATTTAAGGATTCTTCATATTTGATAAATCACAAAAAAACACATGCTGGAGAAAAGCCTTACAGTTGTGATATTTGCCAAAAACCATTTTCGTATAAAACTGTGCTACGTGTCCATATCAGAAGTCAACACACTGGAGAAAGACCATTTCAGTGTGGTATTTGTAAGAAGGCATTTTACAAAAGACAAACTATGGGACGCCACATGAAGACACACACTGGTGAGAAGAATTACCAGTGTGATTCTTGTGGTAAACAGTTCACAAGGTCAACTGCTCTAAAGTCTCATAAACCAACTGATATTGGTGGAAAGCATTATGAGTGTGATATGTGTTTCATAACGTTTATGAGGAAGGCGTGCTTACAGCATCACAAGAAAGAACATGCTTGCAAAACAGAGTACAAACATCACAAAACAACTCACTACATGATAATCAAAGTGTGTCAAtagatgaaaataattttgaatgtAGTAACTGTGACCTGCATTGTTCTTCGCAAAGCTCTTTACAACATCACCAGAGAAATGATTGCAAAGCAActaaatgtcaacaaatagttTGTGAAGCACAAGAGTCACCATCTAGGAAAGATACTACAAGCACAGACGAATTGCCAGACTTTAATTCTAGTCATGATGCACATCCTCTTTCTTACAAATGTGAAGCTTGCGATAAGTACTTTGTTTCTTCAGAGAAATTAAGATCCCACACGTGTATTGGAGTGAAAAAGGAACCACATTCAAATTGTATTGTGAACAAAACACTAATAAGACATGTGTGATGTATATAACTGTGGTTTGGTGGAGACTACAACCAATGAAACAATACCTGATGTTGGGTTCATATGCTTTCATTGTGCTACTATGTTTGATTCACCCACTGAATTGGAAAATCACCTAGCTGCAGTTCATTATAACGATTTCAGTTCTTAATTAACAGCAGAATTTCTGACCTATAGTCAGGTTGAAAAGAACATATCACTACAGGGATATACTAGCCATAGTGATTGATATTTTATGTTTTGTTACCATGACTGTTTTTAAGACTTTAAGCCAAAACTGTAAAACATTAAGCTATAGTTTAAAATAGataatttttgatattttacagtaatggtgtgaatatatattttaaaaggTATGCAAACAGACGTGTTacagtaaaattaatatacCTATAGCAATAGCTGATGAGACATTCAGCTGCGTGTATGGATGCGTGATCACATTTCTTAGATGTCACATGTGGATTATAAAGAAATAATTTACAGAAGTAGTCGGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007861 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR050752 all species →	Family	C2H2-type zinc-finger domain-containing protein	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384 all species →	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09191	GTF3A; general transcription factor IIIA	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.