Gene detail

Detailed information of CAB3987272.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3987272.1, DNA-directed RNA polymerase II subunit RPB4 [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB3987272.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1JQ91	DNA-directed RNA polymerase II subunit RPB4 OS=Bos taurus OX=9913 GN=POLR2D PE=1 SV=1
O15514	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1
Q9D7M8	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008216 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03874 all species →	RNA_pol_Rpb4	RNA polymerase Rpb4	Family	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045222 all species →	Family	DNA-directed RNA polymerase II subunit Rpb4-like	Interproscan
IPR010997 all species →	Homologous_superfamily	HRDC-like superfamily	Interproscan
IPR005574 all species →	Family	RNA polymerase subunit Rpb4/RPC9	Interproscan
IPR006590 all species →	Domain	RNA polymerase Rpb4/RPC9, core	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR038324 all species →	Homologous_superfamily	Rpb4/RPC9 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21297 all species →	DNA-DIRECTED RNA POLYMERASE II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0034402 all species →	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0030880 all species →	Cellular Component	RNA polymerase complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3987272.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.