Genomic Location: not available for this species
NR annotation: CAB3987349.1, Pre-mRNA-processing factor 6 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3987349.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2KJJ0 | Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1 |
| Q91YR7 | Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1 |
| A1A5S1 | Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004674 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13432 all species → | TPR_16 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF01008 all species → | IF-2B | Initiation factor 2 subunit family | Family | Interproscan |
| PF06424 all species → | PRP1_N | PRP1 splicing factor, N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR000649 all species → | Family | Initiation factor 2B-related | Interproscan |
| IPR045075 all species → | Family | Pre-mRNA-splicing factor Syf1-like | Interproscan |
| IPR003107 all species → | Repeat | HAT (Half-A-TPR) repeat | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR010491 all species → | Domain | PRP1 splicing factor, N-terminal | Interproscan |
| IPR037171 all species → | Homologous_superfamily | NagB/RpiA transferase-like | Interproscan |
| IPR042529 all species → | Homologous_superfamily | Initiation factor 2B-like, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11246 all species → | PRE-MRNA SPLICING FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0044237 all species → | Biological Process | obsolete cellular metabolic process | Interproscan |
| GO:0000244 all species → | Biological Process | spliceosomal tri-snRNP complex assembly | Interproscan |
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0046540 all species → | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
CAB3987349.1.Transcript abundance of CAB3987349.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 4.28 | 6.09 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 3.18 | 4.69 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 6.63 | 16.87 | |
| apical branchlet · Control at T0 | 4 | 4 | 2.76 | 5.64 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
