Genomic Location: not available for this species
NR annotation: CAB3988019.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3988019.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q32PG3 | WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1 |
| Q8TAF3 | WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1 |
| Q5RAW8 | WD repeat-containing protein 48 OS=Pongo abelii OX=9601 GN=WDR48 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004683 (this species only) |
| Ubiquitin family | ULD|UFD|RAWUL · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UBL|SUMO · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11816 all species → | DUF3337 | Domain of unknown function (DUF3337) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024940 all species → | Family | Transcription factor TCF/LEF | Interproscan |
| IPR027397 all species → | Homologous_superfamily | Catenin binding domain superfamily | Interproscan |
| IPR021772 all species → | Family | WDR48/Bun107 | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10373 all species → | TRANSCRIPTION FACTOR 7 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000790 all species → | Cellular Component | chromatin | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016055 all species → | Biological Process | Wnt signaling pathway | Interproscan |
| GO:0060070 all species → | Biological Process | canonical Wnt signaling pathway | Interproscan |
| GO:1990907 all species → | Cellular Component | beta-catenin-TCF complex | Interproscan |
CAB3988019.1.Transcript abundance of CAB3988019.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 13.25 | 35.69 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 14.38 | 30.25 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 2.83 | 11.67 | |
| apical branchlet · Control at T0 | 4 | 2 | 4.71 | 9.81 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
