Genomic Location: not available for this species
NR annotation: CAB3988181.1, 40S ribosomal S15 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3988181.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| G1U0Q2 | Small ribosomal subunit protein uS19 OS=Oryctolagus cuniculus OX=9986 GN=RPS15 PE=1 SV=1 |
| P62846 | Small ribosomal subunit protein uS19 OS=Gallus gallus OX=9031 GN=RPS15 PE=1 SV=2 |
| P62841 | Small ribosomal subunit protein uS19 OS=Homo sapiens OX=9606 GN=RPS15 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008424 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00203 all species → | Ribosomal_S19 | Ribosomal protein S19 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020934 all species → | Conserved_site | Small ribosomal subunit protein uS19, conserved site | Interproscan |
| IPR002222 all species → | Family | Small ribosomal subunit protein uS19 | Interproscan |
| IPR023575 all species → | Homologous_superfamily | Small ribosomal subunit protein uS19, superfamily | Interproscan |
| IPR005713 all species → | Family | Small ribosomal subunit protein uS19, eukaryotic/archaeal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11880 all species → | RIBOSOMAL PROTEIN S19P FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0000028 all species → | Biological Process | ribosomal small subunit assembly | Interproscan |
| GO:0022627 all species → | Cellular Component | cytosolic small ribosomal subunit | Interproscan |
| GO:0015935 all species → | Cellular Component | small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02958 | RP-S15e, RPS15; small subunit ribosomal protein S15e | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of CAB3988181.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
