Genomic Location: not available for this species
NR annotation: CAB3988204.1, Pyridoxal kinase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3988204.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O46560 | Pyridoxal kinase OS=Sus scrofa OX=9823 GN=PDXK PE=1 SV=1 |
| Q0II59 | Pyridoxal kinase OS=Bos taurus OX=9913 GN=PDXK PE=2 SV=1 |
| P82197 | Pyridoxal kinase OS=Ovis aries OX=9940 GN=PDXK PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004079 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08543 all species → | Phos_pyr_kin | Phosphomethylpyrimidine kinase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013749 all species → | Domain | Pyridoxamine kinase/Phosphomethylpyrimidine kinase | Interproscan |
| IPR029056 all species → | Homologous_superfamily | Ribokinase-like | Interproscan |
| IPR004625 all species → | Family | Pyridoxine kinase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10534 all species → | PYRIDOXAL KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008478 all species → | Molecular Function | pyridoxal kinase activity | Interproscan |
| GO:0009443 all species → | Biological Process | pyridoxal 5'-phosphate salvage | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00868 | pdxK, pdxY; pyridoxine kinase | EC:2.7.1.35 | Vitamin B6 metabolism | ko00750 | deepkoala |
Transcript abundance of CAB3988204.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
