Genomic Location: not available for this species
NR annotation: CAB3988296.1, beta-glucuronidase-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3988296.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q4FAT7 | Beta-glucuronidase OS=Sus scrofa OX=9823 GN=GUSB PE=3 SV=1 |
| P06760 | Beta-glucuronidase OS=Rattus norvegicus OX=10116 GN=Gusb PE=1 SV=1 |
| O18835 | Beta-glucuronidase OS=Canis lupus familiaris OX=9615 GN=GUSB PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001408 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02836 all species → | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain | Domain | Interproscan |
| PF00071 all species → | Ras | Ras family | Domain | Interproscan |
| PF00703 all species → | Glyco_hydro_2 | Glycosyl hydrolases family 2 | Domain | Interproscan |
| PF02837 all species → | Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005225 all species → | Domain | Small GTP-binding protein domain | Interproscan |
| IPR001806 all species → | Family | Small GTPase | Interproscan |
| IPR002041 all species → | Family | Ran GTPase | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR023232 all species → | Active_site | Glycoside hydrolase, family 2, active site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR006103 all species → | Domain | Glycoside hydrolase family 2, catalytic domain | Interproscan |
| IPR006102 all species → | Domain | Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich | Interproscan |
| IPR023230 all species → | Conserved_site | Glycoside hydrolase, family 2, conserved site | Interproscan |
| IPR006104 all species → | Domain | Glycosyl hydrolases family 2, sugar binding domain | Interproscan |
| IPR036156 all species → | Homologous_superfamily | Beta-Galactosidase/glucuronidase domain superfamily | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10066 all species → | BETA-GLUCURONIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004566 all species → | Molecular Function | beta-glucuronidase activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0019391 all species → | Biological Process | obsolete glucuronoside catabolic process | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0006913 all species → | Biological Process | nucleocytoplasmic transport | Interproscan |
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
CAB3988296.1.Transcript abundance of CAB3988296.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
