Gene detail

Detailed information of CAB3988381.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3988381.1, Conserved oligomeric Golgi complex subunit 5 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3988381.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UP83	Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens OX=9606 GN=COG5 PE=1 SV=4
Q8C0L8	Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus OX=10090 GN=Cog5 PE=1 SV=3
Q9C9V9	Conserved oligomeric Golgi complex subunit 5 OS=Arabidopsis thaliana OX=3702 GN=COG5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002749 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10392 all species →	COG5_N	Conserved oligomeric Golgi complex subunit 5, N-terminal	Repeat	Interproscan
PF20649 all species →	COG5_C	Conserved oligomeric Golgi complex subunit 5, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049176 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, N-terminal	Interproscan
IPR019465 all species →	Family	Conserved oligomeric Golgi complex subunit 5	Interproscan
IPR048485 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13228 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3988381.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3988381.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
apical branchlet · Control at T25	6	0	0.00	0.00
apical branchlet · Temperature treatment at T0	6	0	0.00	0.00
apical branchlet · Temperature treatment at T25	5	0	0.00	0.00
apical branchlet · Control at T0	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.