Gene detail

Detailed information of CAB3989059.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3989059.1, RNA polymerase II elongation factor ELL, partial [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB3989059.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55199	RNA polymerase II elongation factor ELL OS=Homo sapiens OX=9606 GN=ELL PE=1 SV=1
O08856	RNA polymerase II elongation factor ELL OS=Mus musculus OX=10090 GN=Ell PE=2 SV=2
Q9VW51	RNA polymerase II elongation factor Ell OS=Drosophila melanogaster OX=7227 GN=Ell PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10390 all species →	ELL	RNA polymerase II elongation factor ELL	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR031176 all species →	Family	ELL/occludin family	Interproscan
IPR019464 all species →	Domain	RNA polymerase II elongation factor ELL, N-terminal	Interproscan
IPR042065 all species →	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23288 all species →	OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3989059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.