Genomic Location: not available for this species
NR annotation: CAB3989242.1, Nuclear pore complex Nup155, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3989242.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q99P88 | Nuclear pore complex protein Nup155 OS=Mus musculus OX=10090 GN=Nup155 PE=1 SV=1 |
| P37199 | Nuclear pore complex protein Nup155 OS=Rattus norvegicus OX=10116 GN=Nup155 PE=1 SV=1 |
| O75694 | Nuclear pore complex protein Nup155 OS=Homo sapiens OX=9606 GN=NUP155 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004512 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03177 all species → | Nucleoporin_C | Non-repetitive/WGA-negative nucleoporin C-terminal | Family | Interproscan |
| PF04997 all species → | RNA_pol_Rpb1_1 | RNA polymerase Rpb1, domain 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044893 all species → | Homologous_superfamily | RNA polymerase Rpb1, clamp domain superfamily | Interproscan |
| IPR004870 all species → | Family | Nucleoporin, Nup155-like | Interproscan |
| IPR007187 all species → | Domain | Nucleoporin, Nup133/Nup155-like, C-terminal | Interproscan |
| IPR042537 all species → | Homologous_superfamily | Nucleoporin, Nup155-like, C-terminal, subdomain 2 | Interproscan |
| IPR007080 all species → | Domain | RNA polymerase Rpb1, domain 1 | Interproscan |
| IPR042538 all species → | Homologous_superfamily | Nucleoporin, Nup155-like, C-terminal, subdomain 3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10350 all species → | NUCLEAR PORE COMPLEX PROTEIN NUP155 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000972 all species → | Biological Process | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | Interproscan |
| GO:0005643 all species → | Cellular Component | nuclear pore | Interproscan |
| GO:0006405 all species → | Biological Process | RNA export from nucleus | Interproscan |
| GO:0006606 all species → | Biological Process | protein import into nucleus | Interproscan |
| GO:0006913 all species → | Biological Process | nucleocytoplasmic transport | Interproscan |
| GO:0017056 all species → | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0036228 all species → | Biological Process | protein localization to nuclear inner membrane | Interproscan |
| GO:0044611 all species → | Cellular Component | nuclear pore inner ring | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
CAB3989242.1.Transcript abundance of CAB3989242.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 13.49 | 36.52 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 6.56 | 27.87 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 22.30 | 85.67 | |
| apical branchlet · Control at T0 | 4 | 2 | 4.82 | 13.45 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
