Genomic Location: not available for this species
NR annotation: CAB3989328.1, 5 -AMP-activated kinase subunit beta-2-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3989328.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5BIS9 | 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus OX=9913 GN=PRKAB1 PE=2 SV=3 |
| Q9Y478 | 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1 PE=1 SV=4 |
| Q5R801 | 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii OX=9601 GN=PRKAB1 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005394 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04739 all species → | AMPKBI | 5'-AMP-activated protein kinase beta subunit, interaction domain | Family | Interproscan |
| PF16561 all species → | AMPK1_CBM | Glycogen recognition site of AMP-activated protein kinase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006828 all species → | Domain | Association with the SNF1 complex (ASC) domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR032640 all species → | Domain | AMP-activated protein kinase, glycogen-binding domain | Interproscan |
| IPR050827 all species → | Family | CRP1/MDG1 DNA-binding & kinase subunit | Interproscan |
| IPR037256 all species → | Homologous_superfamily | ASC domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10343 all species → | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0019901 all species → | Molecular Function | protein kinase binding | Interproscan |
| GO:0031588 all species → | Cellular Component | nucleotide-activated protein kinase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07199 | PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit | - | Insulin resistance | ko04931 | deepkoala |
Transcript abundance of CAB3989328.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 31.62 | 63.79 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 11.13 | 47.15 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 13.44 | 37.02 | |
| apical branchlet · Control at T0 | 4 | 1 | 3.79 | 15.14 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
