Genomic Location: not available for this species
NR annotation: CAB3989856.1, cysteine synthase 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3989856.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7RYW6 | Cysteine synthase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cys-17 PE=3 SV=1 |
| P50867 | Cysteine synthase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cysB PE=3 SV=2 |
| O59701 | Cysteine synthase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cys11 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004384 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00291 all species → | PALP | Pyridoxal-phosphate dependent enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001216 all species → | Binding_site | Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site | Interproscan |
| IPR036052 all species → | Homologous_superfamily | Tryptophan synthase beta chain-like, PALP domain superfamily | Interproscan |
| IPR001926 all species → | Domain | Tryptophan synthase beta chain-like, PALP domain | Interproscan |
| IPR050214 all species → | Family | Cysteine Synthase/Cystathionine Beta-Synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10314 all species → | CYSTATHIONINE BETA-SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006535 all species → | Biological Process | cysteine biosynthetic process from serine | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0019344 all species → | Biological Process | cysteine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01738 | cysK; cysteine synthase | EC:2.5.1.47 | Cysteine and methionine metabolism | ko00270 | deepkoala |
Transcript abundance of CAB3989856.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
