Genomic Location: not available for this species
NR annotation: CAB3989857.1, superoxide dismutase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3989857.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9K4V3 | Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus OX=1288 GN=sodA PE=1 SV=1 |
| Q49XZ6 | Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sodA PE=3 SV=1 |
| Q9F326 | Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus OX=1281 GN=sodA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001942 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00081 all species → | Sod_Fe_N | Iron/manganese superoxide dismutases, alpha-hairpin domain | Domain | Interproscan |
| PF02777 all species → | Sod_Fe_C | Iron/manganese superoxide dismutases, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036314 all species → | Homologous_superfamily | Manganese/iron superoxide dismutase, C-terminal domain superfamily | Interproscan |
| IPR019831 all species → | Domain | Manganese/iron superoxide dismutase, N-terminal | Interproscan |
| IPR036324 all species → | Homologous_superfamily | Manganese/iron superoxide dismutase, N-terminal domain superfamily | Interproscan |
| IPR019832 all species → | Domain | Manganese/iron superoxide dismutase, C-terminal | Interproscan |
| IPR001189 all species → | Family | Manganese/iron superoxide dismutase | Interproscan |
| IPR019833 all species → | Binding_site | Manganese/iron superoxide dismutase, binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43595 all species → | 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004784 all species → | Molecular Function | superoxide dismutase activity | Interproscan |
| GO:0006801 all species → | Biological Process | superoxide metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04564 | SOD2; superoxide dismutase, Fe-Mn family | EC:1.15.1.1 | Lipid and atherosclerosis | ko05417 | deepkoala |
Transcript abundance of CAB3989857.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 32.38 | 64.79 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 16.59 | 53.96 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 32.53 | 126.78 | |
| apical branchlet · Control at T0 | 4 | 1 | 4.81 | 19.23 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
