Genomic Location: not available for this species
NR annotation: CAB3990022.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990022.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q66T72 | PC4 and SFRS1-interacting protein OS=Felis catus OX=9685 GN=PSIP1 PE=1 SV=1 |
| O75475 | PC4 and SFRS1-interacting protein OS=Homo sapiens OX=9606 GN=PSIP1 PE=1 SV=1 |
| Q9JMG7 | Hepatoma-derived growth factor-related protein 3 OS=Mus musculus OX=10090 GN=Hdgfl3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003399 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11467 all species → | LEDGF | Lens epithelium-derived growth factor (LEDGF) | Domain | Interproscan |
| PF00855 all species → | PWWP | PWWP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021567 all species → | Domain | Lens epithelium-derived growth factor, integrase-binding domain | Interproscan |
| IPR000313 all species → | Domain | PWWP domain | Interproscan |
| IPR035441 all species → | Homologous_superfamily | TFIIS/LEDGF domain superfamily | Interproscan |
| IPR036218 all species → | Homologous_superfamily | HIV integrase-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12550 all species → | HEPATOMA-DERIVED GROWTH FACTOR-RELATED | Interproscan |
CAB3990022.1. This gene does have a gene model — the search simply returned no hit.CAB3990022.1.Transcript abundance of CAB3990022.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 22.84 | 57.68 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 14.63 | 44.09 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 7.25 | 20.21 | |
| apical branchlet · Control at T0 | 4 | 2 | 3.10 | 10.08 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
