Genomic Location: not available for this species
NR annotation: CAB3990109.1, Nuclear pore complex Nup85 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990109.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6DK84 | Nuclear pore complex protein Nup85 OS=Xenopus tropicalis OX=8364 GN=nup85 PE=2 SV=1 |
| Q8R480 | Nuclear pore complex protein Nup85 OS=Mus musculus OX=10090 GN=Nup85 PE=1 SV=1 |
| Q6DBY0 | Nuclear pore complex protein Nup85 OS=Danio rerio OX=7955 GN=nup85 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003358 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07575 all species → | Nucleopor_Nup85 | Nup85 Nucleoporin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011502 all species → | Family | Nucleoporin Nup85-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13373 all species → | FROUNT PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006406 all species → | Biological Process | mRNA export from nucleus | Interproscan |
| GO:0006606 all species → | Biological Process | protein import into nucleus | Interproscan |
| GO:0017056 all species → | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0031080 all species → | Cellular Component | nuclear pore outer ring | Interproscan |
| GO:0045893 all species → | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14304 | NUP85; nuclear pore complex protein Nup85 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3990109.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
