Genomic Location: not available for this species
NR annotation: CAB3990129.1, ferric-chelate reductase 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990129.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003503 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07646 all species → | Kelch_2 | Kelch motif | Repeat | Interproscan |
| PF13415 all species → | Kelch_3 | Galactose oxidase, central domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011498 all species → | Repeat | Kelch repeat type 2 | Interproscan |
| IPR015915 all species → | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47435 all species → | KELCH REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_5G12780) | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB3990129.1.Transcript abundance of CAB3990129.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
