Genomic Location: not available for this species
NR annotation: CAB3990161.1, alpha-catulin-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990161.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9UBT7 | Alpha-catulin OS=Homo sapiens OX=9606 GN=CTNNAL1 PE=1 SV=2 |
| Q5RC06 | Alpha-catulin OS=Pongo abelii OX=9601 GN=CTNNAL1 PE=2 SV=1 |
| O88327 | Alpha-catulin OS=Mus musculus OX=10090 GN=Ctnnal1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002760 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01044 all species → | Vinculin | Vinculin family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006077 all species → | Family | Vinculin/alpha-catenin | Interproscan |
| IPR036723 all species → | Homologous_superfamily | Alpha-catenin/vinculin-like superfamily | Interproscan |
| IPR001033 all species → | Family | Alpha-catenin | Interproscan |
| IPR030045 all species → | Family | Alpha-catulin 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46342 all species → | ALPHA-CATULIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007155 all species → | Biological Process | cell adhesion | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0045296 all species → | Molecular Function | cadherin binding | Interproscan |
| GO:0007266 all species → | Biological Process | Rho protein signal transduction | Interproscan |
CAB3990161.1.Transcript abundance of CAB3990161.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
