Genomic Location: not available for this species
NR annotation: CAB3990230.1, glycine--tRNA ligase-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990230.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5RBL1 | Glycine--tRNA ligase OS=Pongo abelii OX=9601 GN=GARS1 PE=2 SV=1 |
| P41250 | Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS1 PE=1 SV=3 |
| Q9CZD3 | Glycine--tRNA ligase OS=Mus musculus OX=10090 GN=Gars1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004597 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00458 all species → | WHEP-TRS | WHEP-TRS domain | Domain | Interproscan |
| PF00587 all species → | tRNA-synt_2b | tRNA synthetase class II core domain (G, H, P, S and T) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009068 all species → | Homologous_superfamily | uS15/NS1, RNA-binding domain superfamily | Interproscan |
| IPR002315 all species → | Family | Glycyl-tRNA synthetase | Interproscan |
| IPR000738 all species → | Domain | WHEP-TRS domain | Interproscan |
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR027031 all species → | Family | Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 | Interproscan |
| IPR002314 all species → | Domain | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) | Interproscan |
| IPR033731 all species → | Domain | Glycyl-tRNA synthetase-like core domain | Interproscan |
| IPR006195 all species → | Domain | Aminoacyl-tRNA synthetase, class II | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10745 all species → | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004820 all species → | Molecular Function | glycine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006426 all species → | Biological Process | glycyl-tRNA aminoacylation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0070150 all species → | Biological Process | mitochondrial glycyl-tRNA aminoacylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01880 | GARS, glyS1; glycyl-tRNA synthetase | EC:6.1.1.14 | Mitochondrial biogenesis | ko03029 | deepkoala |
Transcript abundance of CAB3990230.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
