Genomic Location: not available for this species
NR annotation: CAB3990243.1, ribonuclease ZC3H12C [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990243.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9C0D7 | Probable ribonuclease ZC3H12C OS=Homo sapiens OX=9606 GN=ZC3H12C PE=1 SV=2 |
| Q5DTV4 | Probable ribonuclease ZC3H12C OS=Mus musculus OX=10090 GN=Zc3h12c PE=1 SV=2 |
| Q5HYM0 | Probable ribonuclease ZC3H12B OS=Homo sapiens OX=9606 GN=ZC3H12B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001621 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18039 all species → | UBA_6 | UBA-like domain | Domain | Interproscan |
| PF11977 all species → | RNase_Zc3h12a | Zc3h12a-like Ribonuclease NYN domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000571 all species → | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR051101 all species → | Family | ZC3H12/N4BP1 Ribonuclease and Regulator | Interproscan |
| IPR040546 all species → | Domain | Rege-1, UBA-like domain | Interproscan |
| IPR021869 all species → | Domain | Ribonuclease Zc3h12a-like, NYN domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12876 all species → | N4BP1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0036464 all species → | Cellular Component | cytoplasmic ribonucleoprotein granule | Interproscan |
| GO:0090502 all species → | Biological Process | obsolete RNA phosphodiester bond hydrolysis, endonucleolytic | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18668 | ZC3H12, MCPIP; ribonuclease ZC3H12 | EC:3.1.-.- | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of CAB3990243.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
