Gene detail

Detailed information of CAB3990289.1 in Paramuricea clavata

Genomic Location: pcla8_s001666:24972...29369
NR annotation: CAB3990289.1, tudor domain-containing 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PACLA_8A038821

ATGCAACGCGTCCCATTTTGTGGCACCTGTTGCAAGCCTTACGCCTTACAAGGCTCTGGAAAACCCGTGGGACAGCGCATTCCGAAATTATTGGACTGTTCGCATACTCTTTGTCAAGGATGTGTTACAAAAATCGCTGGGAATCAAGCACATGTTTTGAATTGCCCAACGTGCAAAGAACAGACTGTGTTGTCAGGCGGTAAGAAAAACATTAAAAATTTACCTACTAACTTGTATATCCTTGGTATTTTGATCAATAACGTAAGGGCAAATATCGAAAACGACATAACAAAGGATGAACTGCTCGATTTTGAATTTGAGAAGGGTTTTACAAAGGCTGGGGGGCGAAATGAGCCCAGGGACGGAGGGGTGGCCCCAGAAGTGGCCCAGGCCGAGGAAAATGCGAAAGTTTGTGACGAATGTTCTGAAAATGCCGCGATAAGTCAATGTCAAAAGTGTGAAGCGATATTTTGTGAAAGTTGTTTCGATTCCATTCATATGTCTTCTCGTACGCTCCGCTCTCATAAAGCCATCCCCTTAGCTTTGACCCACTTATTCGGCGTGACGACCCAAACGTGCGAAACCCATGAGGGGCGAGAGCTGGAGTTTTACGACCACACCGATGGGAAACTCATCTGCTCATTATGTATAGTAACCCCCGCCTATCAGGGTCATAAGATAGTTTCCGCCCACGAATTGACTAACGAGATTACAGATAAAATCAAGCAAAGTCTTCAGAATGTTAAGAAAGTCCATGCCCAGTTGCAAAAGTCGAAGGGAAAGCTGTCGTTGTTGTCTCCTGAAATTAAAACCGAGTTCAGTGATGTCGTGCAACATATTCGAGAGCATTTTCAAGATCTGCATACGAAATTGCAAGCGAGAGAGGTCAACCTTATCAAAGCAGTGAAAGATGCGTATTGCAGCAAAACTTTCCCAGCCGAACTAACTGAAGAAGTGAACCGACAGAGTGAGGAAATTGGAACATTGATCAACCAAGTTAACACAGCATTATTTGCCCCTTCAATCATGATGAAAGTTGGGGAAACCCTCTTGTCCAAAATGGCCGATTTTGAAGATATTCCATGTGTTCTCCCAGAATCGTTCCTACATGATCTTGTCAAGATTTCCTATTCGAAAGAATTCCAGGATGCCTTGAATTCCTATGGTACCATTGTATCGGAAAGTTCTAGCCTGAAGCTGAATAAGATTTCTGAGCAACCTGATGATTTCGATGAAAACGAAGAGCCATCTGCTGTTGTAAGTACGAAGCCCGGAGACTATCCGAAGGCAAACATAGCCCAAACTAGATCCGGTCCGACTATACTAACTATGCCCTCGCGTCAAAATTTAGTGACAGTTTCGCACATCAGTACCCCTACAGACTTTTTCATTCAACATGTTGCCGATTCCGAAAGGCTTGAAAACCTAATGGATGCCATTCAAACTCGCTGTGAAGGAGCCAAGAGTATGAATGATGCAGTCAAGACTACCCAAGTGGGAGACCTGGTTTGTGCCAAGGGTGAAAGCGACGACTGGTGGTACCGTGCTAGAATCATTAGTGAGCAACAACAAGCCAGCGCACCCAAGGGTCGTAACCAACCCCTACCGAAGGTTAAAGTTTACTTCATTGATTATGGCAACACGGAAGTGGCGCCCCTGAACAGGCTTCGTAAGATACCACCCAACTTCGCCGACCTTCCAGAGCTTGCCACAAACTGTTCATTGGTAGATATTGTACCTCCAGGACAATGCAAGACATGGCCTAATGGGTCAATCAAAGCATTGGGGAGCATGGTCCGTGACAAGCACCTCCTTATGGCTGTCATAAAGAAAAGAGGTGGAAAGCTCCTTGTTGATTTGAAGAGTCCCGATACAGATCGGAGCACAGCTAGTGACAAGCCTGCATCTGTTCGTGATGCCCTTGTTTTCCTAGAAGTTGCACATTTTACTAGTCCAGCATCAGTTCCAAACCCAGATGTTGCGTTTCCAGTTCATACCTTCCCGAACGTTACTTTACCCAAAGAAGGCGAAACATTACAAGTGACAGTGACGTACACGGAAACACCAGATGCTATGTATGTTCAGAAGTATAATGGAGCAGAGTATGATGATATGTTGAAAATACTACAACAAATGTTGAATGTATATACATCCAAAAGTGGAGATCAGTGGCAGATAGGTTGGCCATACAAAGATATGGTTTGTGCTGCGAGATACAGCGAAGATCAGAATTGGTATCGTGCTTTGGTCAAGGATGTTTCTGCTGTCAAGAGTGTGAAAGTCCTCTTCGTTGACTTTGGGAATTCTGAAGAGTTGCCCTTCAGCGAGATTCGTCGTCTTCCAGATCACCTGTCAAAACTACCAACACAAGCTATGAAGTGTCGTTTGGCTGGAATAAAGCCTGCTGATCAAGGAGAAGGATGGAGTAATGAATGCGGTTCCTTTCTTAATGATAATTGTTTCCTGCATCCATACCGCATGAAAGTCATTGAAACTGAAGGTGACGAGGAACCAATGTCAGTTGTTTTGTACCTACCAACTCCCCAGGAAGCTTCGTCACTTAACCATCAGCTGGTCCTTAGTTCTCATGCAGCTTTATCAACTGATGCGGAATGTCTTGAGACAGCCAGTGTTGAGGAACCATCCTCACCAGCAAGCAATGCCAGCACACGAGCCAGCGAGGCTGATGATAGTACCTCGAGCATCAACAATGAGCAACGAAAATTACTTTTCCCTCAAAGATTATCTTACATGCCGGTTGACATGCCTGAAAGCAACCAATTCCAGTTTCTTGTGACTTATGTTGACAAGGATTGTACCATATCTGGTTTCCAGCCCGATAAGCGTGATCATTCGCTAGCAGATCTGATGAGACATATGCAAAAGATTTGTAAAGGTAAAGACGGCCCTTCGGTGACCCAAGACCAGTTGTCCTTTAACCAACCATGCTGTGCTAAATATTCTACCGACAACGAGTGGTATCGAGCACAGATTGTCAGTTTCCCAACGTCATCGACAGTCTTGGTCGACTATGTTGACTTCGGTAACAGAGAGGAAATACCTCTAAAAAGCATCAGTCTCAATGCGGCTTTTCTCGATATACCAAAGCAGTGTATAGCAAGCAAACTTGAAGGTCTTCCTCAAACACCAGTTGAACAAGAGAAAGTTTCCAAGTTGCTCGAAGGCTTGTTGGTCGGGGAGATATGCGAAGCAGTTACATCAACAAAGTTTACCATAGATGGTGTGATCAATATCGAACATTTGACTTTACCAGATGGAAGAGATGCTGTTGATGCTGCAAGAGACATGATGATGAGACAGCGTAAAAAACTGGAAGAAAAACCCCGTGTAAGTCAGCCGCTAAAACAGTCCACAGCTGTAGAAACTCGACAAGATGAAAAGAGAATGAGCGAGAAAATGAAGTCTCGACCAACAAAGTCCATACTTGCTGATACTGTTCTTCCAGCTGAAGGCATACCATTTGATGTTGCCGTGACTCAAATTAACTCCAAAAGTGTTGTGTTCCTCCAAAGAGAAATTCCGTCTGAAGACAGCCCCAGATTAGCTGTTGGTCATGATCCTACTCATATCATTGCTTGCGATCACTTACACCAAATGCTGGACATGTCTAACAAAATCAACTTGGAGAATTACTTCAATGGCAAGCCAAATGTCAGCGACGTTTGGAGTAATATGTTGTGCTGTGGGAGATACACAGAAGATGATTTATGGTACCGCGCACAGGTTATCGAAGTGGTTACAAATGACCCGTTGCAAGCCCGTGTGCTTTATGTTGATTATGGAACGTCTGAAGTGATTGGATTGGAGAGGATGAAGGCATTTGCGGCAGAGTTAGCGTCACTGCCCAAACAAGCATTTCAATGTACTGTGATCGGACTGAATGAGGAGAATGGTGATTCTGATGATGATATTGATTCCTTGGCGAATGCAGTGACTGACAAAAAACTTATCTGCAAAGTTGTGAGTTTTGGACCACCAATTCTTGTCGAGCTGTATGAAAGAGTGTTTAATGAAGAGTCTTATGAAGATGTTCCAATAAGCCAAAGAGTGTCAGAACTTGATGTTATGGCTGATGAATTTGAAAATGATGCGGATGAGGATACTACGAGTAGCGAAGAATTAAGTGAAAAGGAGGAAACGGTTGCAGCGAAAGAAGAAAATGAGCAGGTGGACGGTGAAACAGAAGATTTCACAAGCGATGTTAACCCAGTCGGAGATTGGTACTCGGAGTGTGAAGAGACTTTCATGACATATGATCGAGAAGGACTGTCGACTCGGCCGCAGCTATTAACACCGGCTCAGTTCTTATTGAAGAAAGAAAATGTGGTCGAGCATGAAAAGACCATCGAGGTACAAGAAGAATCCGAAGTTGATTGA

Transcript

rna-PACLA_8A038821

ATGCAACGCGTCCCATTTTGTGGCACCTGTTGCAAGCCTTACGCCTTACAAGGCTCTGGAAAACCCGTGGGACAGCGCATTCCGAAATTATTGGACTGTTCGCATACTCTTTGTCAAGGATGTGTTACAAAAATCGCTGGGAATCAAGCACATGTTTTGAATTGCCCAACGTGCAAAGAACAGACTGTGTTGTCAGGCGGtaagaaaaacattaaaaatttacCTACTAACTTGTATATCCTTGGTATTTTGATCAATAACGTAAGGGCAAATATCGAAAACGACATAACAAAGGATGAACTGCTCGATTTTGAATTTGAGAAGGGTTTTACAAAGGCTGGGGGGCGAAATGAGCCCAGGGACGGAGGGGTGGCCCCAGAAGTGGCCCAGGCCGAGGAAAATGCGAAAGTTTGTGACGAATGTTCTGAAAATGCCGCGATAAGTCAATGTCAAAAGTGTGAAGCGATATTTTGTGAAAGTTGTTTCGATTCCATTCATATGTCTTCTCGTACGCTCCGCTCTCATAAAGCCATCCCCTTAGCTTTGACCCACTTATTCGGCGTGACGACCCAAACGTGCGAAACCCATGAGGGGCGAGAGCTGGAGTTTTACGACCACACCGATGGGAAACTCATCTGCTCATTATGTATAGTAACCCCCGCCTATCAGGGTCATAAGATAGTTTCCGCCCACGAATTGACTAACGAGATTACAGATAAAATCAAGCAAAGTCTTCAGAATGTTAAGAAAGTCCATGCCCAGTTGCAAAAGTCGAAGGGAAAGCTGTCGTTGTTGTCTCCTGAAATTAAAACCGAGTTCAGTGATGTCGTGCAACATATTCGAGAGCATTTTCAAGATCTGCATACGAAATTGCAAGCGAGAGAGGTCAACCTTATCAAAGCAGTGAAAGATGCGTATTGCAGCAAAACTTTCCCAGCCGAACTAACTGAAGAAGTGAACCGACAGAGTGAGGAAATTGGAACATTGATCAACCAAGTTAACACAGCATTATTTGCCCCTTCAATCATGATGAAAGTTGGGGAAACCCTCTTGTCCAAAATGGCCGATTTTGAAGATATTCCATGTGTTCTCCCAGAATCGTTCCTACATGATCTTGTCAAGATTTCCTATTCGAAAGAATTCCAGGATGCCTTGAATTCCTATGGTACCATTGTATCGGAAAGTTCTAGCCTGAAGCTGAATAAGATTTCTGAGCAACCTGATGATTTCGATGAAAACGAAGAGCCATCTGCTGTTGTAAGTACGAAGCCCGGAGACTATCCGAAGGCAAACATAGCCCAAACTAGATCCGGTCCGACTATACTAACTATGCCCTCGCGTCAAAATTTAGTGACAGTTTCGCACATCAGTACCCCTACAGACTTTTTCATTCAACATGTTGCCGATTCCGAAAGGCTTGAAAACCTAATGGATGCCATTCAAACTCGCTGTGAAGGAGCCAAGAGTATGAATGATGCAGTCAAGACTACCCAAGTGGGAGACCTGGTTTGTGCCAAGGGTGAAAGCGACGACTGGTGGTACCGTGCTAGAATCATTAGTGAGCAACAACAAGCCAGCGCACCCAAGGGTCGTAACCAACCCCTACCGAAGGTTAAAGTTTACTTCATTGATTATGGCAACACGGAAGTGGCGCCCCTGAACAGGCTTCGTAAGATACCACCCAACTTCGCCGACCTTCCAGAGCTTGCCACAAACTGTTCATTGGTAGATATTGTACCTCCAGGACAATGCAAGACATGGCCTAATGGGTCAATCAAAGCATTGGGGAGCATGGTCCGTGACAAGCACCTCCTTATGGCTGTCATAAAGAAAAGAGGTGGAAAGCTCCTTGTTGATTTGAAGAGTCCCGATACAGATCGGAGCACAGCTAGTGACAAGCCTGCATCTGTTCGTGATGCCCTTGTTTTCCTAGAAGTTGCACATTTTACTAGTCCAGCATCAGTTCCAAACCCAGATGTTGCGTTTCCAGTTCATACCTTCCCGAACGTTACTTTACCCAAAGAAGGCGAAACATTACAAGTGACAGTGACGTACACGGAAACACCAGATGCTATGTATGTTCAGAAGTATAATGGAGCAGAGTATGATGATATGTTGAAAATACTACAACAAATGTTGAATGTATATACATCCAAAAGTGGAGATCAGTGGCAGATAGGTTGGCCATACAAAGATATGGTTTGTGCTGCGAGATACAGCGAAGATCAGAATTGGTATCGTGCTTTGGTCAAGGATGTTTCTGCTGTCAAGAGTGTGAAAGTCCTCTTCGTTGACTTTGGGAATTCTGAAGAGTTGCCCTTCAGCGAGATTCGTCGTCTTCCAGATCACCTGTCAAAACTACCAACACAAGCTATGAAGTGTCGTTTGGCTGGAATAAAGCCTGCTGATCAAGGAGAAGGATGGAGTAATGAATGCGGTTCCTTTCTTAATGATAATTGTTTCCTGCATCCATACCGCATGAAAGTCATTGAAACTGAAGGTGACGAGGAACCAATGTCAGTTGTTTTGTACCTACCAACTCCCCAGGAAGCTTCGTCACTTAACCATCAGCTGGTCCTTAGTTCTCATGCAGCTTTATCAACTGATGCGGAATGTCTTGAGACAGCCAGTGTTGAGGAACCATCCTCACCAGCAAGCAATGCCAGCACACGAGCCAGCGAGGCTGATGATAGTACCTCGAGCATCAACAATGAGCAACGAAAATTACTTTTCCCTCAAAGATTATCTTACATGCCGGTTGACATGCCTGAAAGCAACCAATTCCAGTTTCTTGTGACTTATGTTGACAAGGATTGTACCATATCTGGTTTCCAGCCCGATAAGCGTGATCATTCGCTAGCAGATCTGATGAGACATATGCAAAAGATTTGTAAAGGTAAAGACGGCCCTTCGGTGACCCAAGACCAGTTGTCCTTTAACCAACCATGCTGTGCTAAATATTCTACCGACAACGAGTGGTATCGAGCACAGATTGTCAGTTTCCCAACGTCATCGACAGTCTTGGTCGACTATGTTGACTTCGGTAACAGAGAGGAAATACCTCTAAAAAGCATCAGTCTCAATGCGGCTTTTCTCGATATACCAAAGCAGTGTATAGCAAGCAAACTTGAAGGTCTTCCTCAAACACCAGTTGAACAAGAGAAAGTTTCCAAGTTGCTCGAAGGCTTGTTGGTCGGGGAGATATGCGAAGCAGTTACATCAACAAAGTTTACCATAGATGGTGTGATCAATATCGAACATTTGACTTTACCAGATGGAAGAGATGCTGTTGATGCTGCAAGAGACATGATGATGAGACAGCGTAAAAAACTGGAAGAAAAACCCCGTGTAAGTCAGCCGCTAAAACAGTCCACAGCTGTAGAAACTCGACAAGATGAAAAGAGAATGAGCGAGAAAATGAAGTCTCGACCAACAAAGTCCATACTTGCTGATACTGTTCTTCCAGCTGAAGGCATACCATTTGATGTTGCCGTGACTCAAATTAACTCCAAAAGTGTTGTGTTCCTCCAAAGAGAAATTCCGTCTGAAGACAGCCCCAGATTAGCTGTTGGTCATGATCCTACTCATATCATTGCTTGCGATCACTTACACCAAATGCTGGACATGTCTAACAAAATCAACTTGGAGAATTACTTCAATGGCAAGCCAAATGTCAGCGACGTTTGGAGTAATATGTTGTGCTGTGGGAGATACACAGAAGATGATTTATGGTACCGCGCACAGGTTATCGAAGTGGTTACAAATGACCCGTTGCAAGCCCGTGTGCTTTATGTTGATTATGGAACGTCTGAAGTGATTGGATTGGAGAGGATGAAGGCATTTGCGGCAGAGTTAGCGTCACTGCCCAAACAAGCATTTCAATGTACTGTGATCGGACTGAATGAGGAGAATGGTGATTCTGATGATGATATTGATTCCTTGGCGAATGCAGTGACTGACAAAAAACTTATCTGCAAAGTTGTGAGTTTTGGACCACCAATTCTTGTCGAGCTGTATGAAAGAGTGTTTAATGAAGAGTCTTATGAAGATGTTCCAATAAGCCAAAGAGTGTCAGAACTTGATGTTATGGCTGATGAATTTGAAAATGATGCGGATGAGGATACTACGAGTAGCGAAGAATTAAGTGAAAAGGAGGAAACGGTTGCAGCGAAAGAAGAAAATGAGCAGGTGGACGGTGAAACAGAAGATTTCACAAGCGATGTTAACCCAGTCGGAGATTGGTACTCGGAGTGTGAAGAGACTTTCATGACATATGATCGAGAAGGACTGTCGACTCGGCCGCAGCTATTAACACCGGCTCAGTTCTTATTGAAGAAAGAAAATGTGGTCGAGCATGAAAAGACCATCGAGGTACAAGAAGAATCCGAAGTTGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9CPT4	Tudor domain-containing protein 1 OS=Oryzias latipes OX=8090 GN=tdrd1 PE=2 SV=1
Q4R3G4	RING finger protein 17 OS=Macaca fascicularis OX=9541 GN=RNF17 PE=2 SV=2
Q9BXT4	Tudor domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TDRD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003362 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039117 all species →	Family	RING finger protein 17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442 all species →	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3990289.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

15TPM > 0

4Conditions

13.4Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	3.74	7.30
apical branchlet · Temperature treatment at T0	6	4	1.48	4.51
apical branchlet · Temperature treatment at T25	5	4	5.15	13.43
apical branchlet · Control at T0	4	2	2.47	8.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.30
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.69
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	3.94
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.68
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.82
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	4.51
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.88
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.50
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.99
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	13.43
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	6.07
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.99
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	2.24
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	8.19
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.71
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.