Genomic Location: not available for this species
NR annotation: CAB3990333.1, S-phase kinase-associated 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990333.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3ZCF3 | S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1 |
| P63209 | S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2 |
| Q5ZKF5 | S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004214 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|SKP1 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01466 all species → | Skp1 | Skp1 family, dimerisation domain | Domain | Interproscan |
| PF03931 all species → | Skp1_POZ | Skp1 family, tetramerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016072 all species → | Domain | SKP1 component, dimerisation | Interproscan |
| IPR036296 all species → | Homologous_superfamily | SKP1-like, dimerisation domain superfamily | Interproscan |
| IPR016897 all species → | Family | S-phase kinase-associated protein 1 | Interproscan |
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR016073 all species → | Domain | SKP1 component, POZ domain | Interproscan |
| IPR001232 all species → | Family | S-phase kinase-associated protein 1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11165 all species → | SKP1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0031146 all species → | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0097602 all species → | Molecular Function | cullin family protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03094 | SKP1, CBF3D; S-phase kinase-associated protein 1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3990333.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 132.14 | 236.56 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 132.58 | 234.21 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 47.73 | 70.98 | |
| apical branchlet · Control at T0 | 4 | 3 | 37.46 | 94.66 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
