Genomic Location: not available for this species
NR annotation: CAB3990339.1, Ras association domain-containing 2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990339.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3B7D5 | Ras association domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Rassf2 PE=2 SV=1 |
| Q9H2L5 | Ras association domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RASSF4 PE=1 SV=2 |
| Q8CB96 | Ras association domain-containing protein 4 OS=Mus musculus OX=10090 GN=Rassf4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001125 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00788 all species → | RA | Ras association (RalGDS/AF-6) domain | Domain | Interproscan |
| PF16517 all species → | Nore1-SARAH | Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain | Domain | Interproscan |
| PF00412 all species → | LIM | LIM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000159 all species → | Domain | Ras-associating domain | Interproscan |
| IPR001781 all species → | Domain | Zinc finger, LIM-type | Interproscan |
| IPR011524 all species → | Domain | SARAH domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR033614 all species → | Family | Ras association domain-containing protein 1-6 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22738 all species → | RASSF | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
CAB3990339.1.Transcript abundance of CAB3990339.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
