Genomic Location: not available for this species
NR annotation: CAB3990706.1, metalloprotease TIKI1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3990706.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P0DJQ9 | Metalloprotease TIKI2 OS=Xenopus tropicalis OX=8364 GN=trabd2b PE=2 SV=1 |
| F6PTN1 | Metalloprotease TIKI1 OS=Xenopus tropicalis OX=8364 GN=trabd2a PE=2 SV=2 |
| A7RX69 | Metalloprotease TIKI homolog OS=Nematostella vectensis OX=45351 GN=v1g27680 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004605 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01963 all species → | TraB_PrgY_gumN | TraB/PrgY/gumN family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040230 all species → | Family | Protease TIKI1/2-like | Interproscan |
| IPR002816 all species → | Family | TraB/PrgY/GumN family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31120 all species → | METALLOPROTEASE TIKI | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004175 all species → | Molecular Function | endopeptidase activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0030178 all species → | Biological Process | negative regulation of Wnt signaling pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25185 | TRABD2; metalloprotease TIKI | EC:3.4.-.- | Peptidases and inhibitors | ko01002 | deepkoala |
Transcript abundance of CAB3990706.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
