Genomic Location: not available for this species
NR annotation: CAB3991218.1, bromodomain-containing 3-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3991219.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5TJG6 | Bromodomain-containing protein 2 OS=Canis lupus familiaris OX=9615 GN=BRD2 PE=3 SV=1 |
| P25440 | Bromodomain-containing protein 2 OS=Homo sapiens OX=9606 GN=BRD2 PE=1 SV=2 |
| Q32S26 | Bromodomain-containing protein 2 OS=Bos taurus OX=9913 GN=BRD2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002591 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17105 all species → | BRD4_CDT | C-terminal domain of bromodomain protein 4 | Family | Interproscan |
| PF17035 all species → | BET | Bromodomain extra-terminal - transcription regulation | Domain | Interproscan |
| PF00439 all species → | Bromodomain | Bromodomain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027353 all species → | Domain | NET domain | Interproscan |
| IPR031354 all species → | Domain | Bromodomain protein 4, C-terminal | Interproscan |
| IPR036427 all species → | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR038336 all species → | Homologous_superfamily | NET domain superfamily | Interproscan |
| IPR001487 all species → | Domain | Bromodomain | Interproscan |
| IPR018359 all species → | Conserved_site | Bromodomain, conserved site | Interproscan |
| IPR043509 all species → | Domain | Brdt, bromodomain, repeat II | Interproscan |
| IPR050935 all species → | Family | Bromodomain-containing chromatin reader | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22880 all species → | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000785 all species → | Cellular Component | chromatin | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0070577 all species → | Molecular Function | lysine-acetylated histone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08871 | BRD2; bromodomain-containing protein 2 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3991219.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
