Genomic Location: not available for this species
NR annotation: CAB3991292.1, methylenetetrahydrofolate reductase-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3991292.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9WU20 | Methylenetetrahydrofolate reductase (NADPH) OS=Mus musculus OX=10090 GN=Mthfr PE=1 SV=2 |
| P42898 | Methylenetetrahydrofolate reductase (NADPH) OS=Homo sapiens OX=9606 GN=MTHFR PE=1 SV=3 |
| Q5I598 | Methylenetetrahydrofolate reductase (NADPH) OS=Bos taurus OX=9913 GN=MTHFR PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001885 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02219 all species → | MTHFR | Methylenetetrahydrofolate reductase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029041 all species → | Homologous_superfamily | FAD-linked oxidoreductase-like | Interproscan |
| IPR003171 all species → | Family | Methylenetetrahydrofolate reductase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45754 all species → | METHYLENETETRAHYDROFOLATE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004489 all species → | Molecular Function | methylenetetrahydrofolate reductase (NAD(P)H) activity | Interproscan |
| GO:0006555 all species → | Biological Process | methionine metabolic process | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009086 all species → | Biological Process | methionine biosynthetic process | Interproscan |
| GO:0035999 all species → | Biological Process | tetrahydrofolate interconversion | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25004 | MTHFR; methylenetetrahydrofolate reductase (NADPH) | EC:1.5.1.53 | Antifolate resistance | ko01523 | deepkoala |
Transcript abundance of CAB3991292.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
