Genomic Location: not available for this species
NR annotation: CAB3991684.1, digestive organ expansion factor homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3991684.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q642T7 | U3 small nucleolar RNA-associated protein 25 homolog OS=Xenopus tropicalis OX=8364 GN=utp25 PE=2 SV=1 |
| Q5ZLG3 | U3 small nucleolar RNA-associated protein 25 homolog OS=Gallus gallus OX=9031 GN=UTP25 PE=2 SV=1 |
| Q6PEH4 | U3 small nucleolar RNA-associated protein 25 homolog OS=Danio rerio OX=7955 GN=utp25 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002847 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14707 all species → | Sulfatase_C | C-terminal region of aryl-sulfatase | Domain | Interproscan |
| PF00884 all species → | Sulfatase | Sulfatase | Family | Interproscan |
| PF06862 all species → | UTP25 | Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017850 all species → | Homologous_superfamily | Alkaline-phosphatase-like, core domain superfamily | Interproscan |
| IPR010678 all species → | Family | U3 small nucleolar RNA-associated protein 25 | Interproscan |
| IPR000917 all species → | Domain | Sulfatase, N-terminal | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12933 all species → | ORF PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000462 all species → | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0034511 all species → | Molecular Function | U3 snoRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00889 | PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase | EC:2.7.1.68 | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3991684.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
