Genomic Location: not available for this species
NR annotation: CAB3992037.1, Propionyl- carboxylase beta chain, mitochondrial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3992037.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P79384 | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa OX=9823 GN=PCCB PE=1 SV=1 |
| Q2TBR0 | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus OX=9913 GN=PCCB PE=2 SV=1 |
| P05166 | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens OX=9606 GN=PCCB PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004376 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01039 all species → | Carboxyl_trans | Carboxyl transferase domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029045 all species → | Homologous_superfamily | ClpP/crotonase-like domain superfamily | Interproscan |
| IPR011763 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, C-terminal | Interproscan |
| IPR051047 all species → | Family | Acyl-CoA Carboxylase Beta Subunit | Interproscan |
| IPR034733 all species → | Domain | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Interproscan |
| IPR011762 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43842 all species → | PROPIONYL-COA CARBOXYLASE BETA CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016874 all species → | Molecular Function | ligase activity | Interproscan |
| GO:0004658 all species → | Molecular Function | propionyl-CoA carboxylase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01966 | PCCB, pccB; propionyl-CoA carboxylase beta subunit | EC:6.4.1.3 EC:2.1.3.15 | Valine, leucine and isoleucine degradation | ko00280 | deepkoala |
Transcript abundance of CAB3992037.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
